PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000287069
Common NameLOC103435166, MdTCP2B
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 484aa    MW: 52876.7 Da    PI: 7.7671
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000287069genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.74.2e-34712312132
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec 73 
                     g+kdrhsk+ T++g+RdRRvRls+++a++++dLqd+L +d++sk+ieWL+++a  ai el+++                       +++sa    
  MDP0000287069  71 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIELYDLQDRLNYDQPSKAIEWLIKAAADAIAELPSLnnssfpdtpkqlsdekrascergGFDSAeI-E 165
                    689*************************************************************999999888888887777777774444421.2 PP

            TCP  74 ...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmri 132
                       + ++++++++n+s++ + +++a+s+ s++s+ s l+l++      r+kar+rarer ++++ +
  MDP0000287069 166 fdqNYNQNQNQTGNQSQHLSLSKSACSSTSETSKGSGLSLSRsevrVNRSKARERARERAAKDKDK 231
                    334566666666677777777777788888888888888887533355599999999987776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4272230IPR005333Transcription factor, TCP
PROSITE profilePS5136929.37173131IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.996211229IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEVEEIQASN KFPRIGNGSS RDHKPSPEDD DNQDPSCLEV KRDAATTAAA DAGNRLRGWH  60
HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTAIE LYDLQDRLNY DQPSKAIEWL  120
IKAAADAIAE LPSLNNSSFP DTPKQLSDEK RASCERGGFD SAEIEFDQNY NQNQNQTGNQ  180
SQHLSLSKSA CSSTSETSKG SGLSLSRSEV RVNRSKARER ARERAAKDKD KESIESAYPH  240
NISQQNSSFT ELLTAGIGTA HNNNDSRTAS AHHHQQNHGC GGGEPILFHK APAPMDYFSP  300
GLLGLSSSAR THHSAGFSGQ IHLGMNSIPQ TMSVVSPFNV SGEHHHGHHS SELQHFSFVP  360
DLIPVTTSSE PGNGGDYNLN FSISSSGGLA GFNRGTLQSN SSSSPSLMPH HLQRFSPIDG  420
SSNVPFFIGA AAAAAAPTME NHHHHHHHHH QQHQQQFPGG FDRRLQQLYG DGTRHADHKG  480
KAKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.6630.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310200.0AB531020.1 Malus x domestica MdTCP2B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371780.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371781.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371782.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371783.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371784.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_008371785.10.0PREDICTED: transcription factor TCP2-like
TrEMBLD5MRQ10.0D5MRQ1_MALDO; MdTCP2B protein
STRINGVIT_10s0003g03910.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Mimida N, et al.
    Apple FLOWERING LOCUS T proteins interact with transcription factors implicated in cell growth and organ development.
    Tree Physiol., 2011. 31(5): p. 555-66
    [PMID:21571725]